Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50119

Metabolite ID
P50119
Deionized mass
637.2463 Da
Average m/z
638.2558
Average RT
26.7084
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
82
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

82 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)3.15e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.426e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)4.804e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)8.76e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.529e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)5.844e-12
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)3.074e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.651e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.826e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.592e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.734e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.508e-14
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)5.954e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.426e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.16e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.16e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.157e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.071e-15
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)5.023e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.453e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.62e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.151e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.634e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.634e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.634e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.141e-13
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)6.721e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)6.721e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)6.721e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)6.721e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)6.721e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)6.721e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)6.721e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)6.721e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)6.721e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)6.721e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.638e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.651e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.651e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.651e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.651e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)4.404e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.543e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.543e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.188e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.255e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.255e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.043e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.868e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.694e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.826e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)7.93e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)5.427e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)1.05e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)2.918e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.916e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.592e-11
Glyma.13G138300 hypothetical protein AT2G37130:AT2G37130:Peroxidase superfamily protein 1Chr13:25095882–25099473 (-)1.824e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.23e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)2.182e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.663e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.734e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)6.639e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.733e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.108e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.429e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.348e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.832e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.529e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.529e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.343e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.081e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.065e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.194e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.194e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.509e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.841e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.239e-12
Glyma.18G289000 ACT domain-containing protein ACR9 AT2G39570:ACR9:ACT domain-containing protein 1Chr18:56863534–56867736 (-)3.085e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.739e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.739e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.399e-12