Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50078

Metabolite ID
P50078
Deionized mass
450.0619 Da
Average m/z
451.0691
Average RT
26.6984
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)9.047e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.745e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.393e-12
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)4.325e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.984e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.838e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.718e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.733e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.807e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.097e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.728e-12
Glyma.02G292200 hypothetical protein AT3G20475:MSH5:MUTS-homologue 5 1Chr02:47125531–47139234 (-)2.376e-11
Glyma.02G292500 hypothetical protein AT5G55070:AT5G55070:Dihydrolipoamide succinyltransferase 1Chr02:47153091–47160573 (+)2.376e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)5.904e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.022e-13
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)3.16e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.036e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.46e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.775e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.643e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.215e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.203e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.252e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)6.493e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.745e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.745e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.42e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.218e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.085e-11
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)1.158e-11
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)7.62e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.984e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)1.399e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)9.953e-12
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)7.725e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.697e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.366e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.02e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.92e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.918e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.169e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.319e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)7.561e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.642e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.809e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.809e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)4.733e-11
Glyma.13G193900 hypothetical protein NA 1Chr13:30714547–30714981 (-)3.842e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.501e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.402e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.718e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.315e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.315e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.331e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.548e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.482e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.039e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.052e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)6.668e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)6.668e-11
Glyma.17G007400 hypothetical protein NA 1Chr17:630066–634738 (-)8.168e-11
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)4.627e-11
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)5.643e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.393e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.568e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.276e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.276e-13
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)4.78e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)6.108e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)7.273e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.105e-11