Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50070

Metabolite ID
P50070
Deionized mass
112.0879 Da
Average m/z
113.0955
Average RT
26.6951
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)9.743e-17
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)6.616e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.584e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)5.068e-13
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)1.347e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.153e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.98e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.882e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.588e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.587e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.588e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.632e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.738e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.383e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.955e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.493e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.493e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)9.674e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)9.675e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.796e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.796e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.584e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.584e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.584e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.584e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.25e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.25e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)8.514e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)7.005e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.643e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.777e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.643e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.643e-13
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)2.447e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.026e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.026e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)8.08e-13
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.744e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.734e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.164e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.425e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.425e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.914e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.914e-13
Glyma.18G227600 hypothetical protein NA 1Chr18:51682656–51683652 (+)3.845e-11
Glyma.18G247000 hypothetical protein NA 1Chr18:53433846–53444848 (-)1.73e-12
Glyma.20G177500 hypothetical protein AT5G63220:AT5G63220:golgi-to-ER traffic-like protein 1Chr20:41470287–41483978 (+)7.7e-12