Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50068

Metabolite ID
P50068
Deionized mass
188.1149 Da
Average m/z
189.1217
Average RT
26.6949
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)6.402e-15
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.352e-11
Glyma.06G098300 hypothetical protein AT5G49680:AT5G49680:SABRE-like protein__AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 2Chr06:7796762–7832753 (-)4.233e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.262e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.693e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.159e-12
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)6.504e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.709e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.699e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.88e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)4.496e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)6.915e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.901e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.079e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.797e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)7.041e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)7.041e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)7.041e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.507e-11
Glyma.06G097800 hypothetical protein AT1G58230:AT1G58230:binding protein 1Chr06:7725465–7766431 (+)4.233e-12
Glyma.06G098200 hypothetical protein NA 1Chr06:7790290–7791746 (+)4.233e-12
Glyma.06G098700 hypothetical protein NA 1Chr06:7851216–7866791 (-)4.233e-12
Glyma.06G098800 hypothetical protein AT1G29060:AT1G29060:Target SNARE coiled-coil domain protein 1Chr06:7869693–7873331 (+)4.233e-12
Glyma.06G098900 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr06:7874852–7879537 (-)4.233e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.335e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.335e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.577e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.134e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.412e-14
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.187e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.81e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)8.93e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.774e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.774e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.768e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.275e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.275e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.243e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)7.396e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.396e-11
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)8.661e-11
Glyma.14G198600 hypothetical protein NA 1Chr14:46360801–46362778 (+)5.707e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.376e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.869e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.365e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.821e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.478e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.568e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.57e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)2.201e-11
Glyma.19G002200 hypothetical protein NA 1Chr19:144515–146552 (+)2.498e-13
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.038e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.329e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.088e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.829e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.425e-11
Glyma.20G179600 hypothetical protein AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 1Chr20:41714740–41719977 (-)8.687e-11