Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50011

Metabolite ID
P50011
Deionized mass
619.4247 Da
Average m/z
620.4321
Average RT
26.6682
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.833e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.271e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.894e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.659e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.777e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.887e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)6.205e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.019e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.309e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.554e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.93e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.926e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.926e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.438e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.258e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.258e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.258e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.84e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.191e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.833e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.833e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.202e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.242e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.907e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.23e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.438e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.546e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.546e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.731e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.731e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.013e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.013e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.285e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.285e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.285e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.285e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.276e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.894e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.605e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.898e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.605e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.605e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.395e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.71e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)9.523e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)9.523e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.188e-11