Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49986

Metabolite ID
P49986
Deionized mass
652.2904 Da
Average m/z
653.3011
Average RT
26.6371
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.53e-11
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)2.45e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.324e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)9.497e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)9.498e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)9.498e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.549e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)1.82e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.151e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.151e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.401e-11
Glyma.01G175700 hypothetical protein NA 1Chr01:51244446–51248246 (+)5.056e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.196e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.141e-11
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)9.635e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)1.476e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)2.509e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.53e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.53e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.267e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.45e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.45e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.45e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.45e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)7.726e-14
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.574e-14
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)4.499e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)4.499e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)9.498e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)9.498e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)9.498e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.81e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)9.498e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)9.498e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)5.561e-13
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.907e-12
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)7.387e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.82e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.324e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)7.908e-13
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)7.402e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)7.402e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)6.782e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)3.892e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.098e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.098e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.151e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.767e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)4.618e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.685e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.626e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.046e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.438e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.438e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.109e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.241e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)9.563e-14
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.692e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)4.799e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.236e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.261e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)8.519e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.705e-11