Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49962

Metabolite ID
P49962
Deionized mass
270.2172 Da
Average m/z
271.2241
Average RT
26.5896
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)7.143e-13
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.263e-13
Glyma.07G013800 hypothetical protein AT5G35790:G6PD1:glucose-6-phosphate dehydrogenase 1 3Chr07:1073133–1082652 (+)9.52e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr03:1683395–1688893 (-)1.795e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)5.643e-12
Glyma.07G010200 hypothetical protein NA 2Chr07:753451–763749 (-)2.314e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.187e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)4.447e-16
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.885e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.152e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.87e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.116e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.116e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.844e-14
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)1.879e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.847e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.847e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)4.383e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.185e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.218e-11
Glyma.03G033800 EXPB3 AT1G65680:EXPB2:expansin B2 1Chr03:3927353–3930165 (-)1.439e-12
Glyma.03G034000 hypothetical protein NA 1Chr03:3971585–3975700 (-)3.609e-12
Glyma.03G034200 hypothetical protein NA 1Chr03:3989072–3993561 (+)2.049e-12
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)3.884e-12
Glyma.03G036500 WNK5 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr03:4402746–4408323 (+)6.574e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.447e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.077e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)6.92e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.221e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.454e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.454e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.848e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.848e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.848e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.317e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.906e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.077e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.988e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.988e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.988e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.306e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.287e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.287e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.287e-11
Glyma.06G289600 hypothetical protein AT5G51740:AT5G51740:Peptidase family M48 family protein 1Chr06:47831855–47835534 (-)1.99e-11
Glyma.06G289900 hypothetical protein AT2G20590:AT2G20590:Reticulon family protein 1Chr06:47861573–47865518 (-)9.619e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.175e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.175e-11
Glyma.07G010400 hypothetical protein AT3G13750:BGAL1:beta galactosidase 1 1Chr07:783384–789811 (-)9.52e-11
Glyma.07G010500 hypothetical protein AT1G55150:RH20:DEA(D/H)-box RNA helicase family protein 1Chr07:803172–810263 (+)2.314e-11
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)2.314e-11
Glyma.07G010800 hypothetical protein NA 1Chr07:824697–827823 (-)2.314e-11
Glyma.07G010900 hypothetical protein AT1G55180:PLDEPSILON:phospholipase D alpha 4 1Chr07:830443–834361 (-)2.314e-11
Glyma.07G011000 hypothetical protein NA 1Chr07:838965–841202 (+)9.52e-11
Glyma.07G011100 hypothetical protein AT3G13700:AT3G13700:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr07:843406–847022 (+)2.314e-11
Glyma.07G011200 hypothetical protein AT5G49010:SLD5:DNA replication protein-like protein 1Chr07:847783–850968 (-)2.314e-11
Glyma.07G011500 hypothetical protein NA 1Chr07:879557–882132 (+)9.52e-11
Glyma.07G011600 hypothetical protein AT3G21250:ABCC8:multidrug resistance-associated protein 6 1Chr07:885910–891586 (+)2.314e-11
Glyma.07G012500 hypothetical protein AT1G51720:AT1G51720:Amino acid dehydrogenase family protein 1Chr07:977060–987360 (+)9.52e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.907e-14
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.907e-14
Glyma.07G013700 hypothetical protein AT4G29990:AT4G29990:Leucine-rich repeat transmembrane protein kinase protein 1Chr07:1063337–1068561 (-)9.52e-11
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)5.864e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.345e-13
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.231e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.231e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.312e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)8.923e-11
Glyma.07G080900 hypothetical protein NA 1Chr07:7381339–7405785 (+)3.168e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.569e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.88e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)4.912e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.271e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.235e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.323e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.323e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.323e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.568e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.568e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.413e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.413e-14
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)3.517e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)1.981e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.137e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.152e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.721e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.698e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.16e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.87e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.909e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.909e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.116e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.844e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.052e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.651e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.212e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)4.98e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.097e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.637e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.854e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.5e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.384e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)3.968e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.039e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.287e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)4.12e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.57e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)2.894e-11
Glyma.18G294700 hypothetical protein NA 1Chr18:57225771–57226725 (+)6.392e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)4.218e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.521e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.521e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.43e-12