Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49937

Metabolite ID
P49937
Deionized mass
474.3140 Da
Average m/z
475.3225
Average RT
26.5438
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.272e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)7.273e-13
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)1.047e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.342e-17
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.805e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.272e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.154e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.154e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.378e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.505e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.112e-15
Glyma.04G105200 hypothetical protein AT1G78000:SULTR1;2:sulfate transporter 1;2 1Chr04:10100969–10108172 (-)5e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)1.047e-11
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)1.047e-11
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)1.047e-11
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)1.047e-11
Glyma.04G111100 hypothetical protein NA 1Chr04:12268017–12269798 (-)5.782e-11
Glyma.04G111200 hypothetical protein AT2G43280:AT2G43280:Far-red impaired responsive (FAR1) family protein 1Chr04:12284839–12291882 (+)5e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.431e-14
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)2.904e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.846e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.232e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.499e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.548e-11
Glyma.09G052100 hypothetical protein AT3G22230:AT3G22230:Ribosomal L27e protein family 1Chr09:4536612–4538089 (+)2.076e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)6.973e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.539e-14
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.821e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.821e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.352e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.508e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.826e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.373e-14
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.304e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.304e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.304e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)2.106e-11
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)5.649e-11
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)5.649e-11
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)4.909e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)1.386e-12
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)7.593e-14
Glyma.14G045100 hypothetical protein AT3G43600:AAO2:aldehyde oxidase 2__AT1G04580:AO4:aldehyde oxidase 4__AT5G20960:AO1:aldehyde oxidase 1__AT2G27150:AAO3:a… 1Chr14:3438828–3448015 (-)7.997e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.841e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.875e-12