Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49896

Metabolite ID
P49896
Deionized mass
250.1573 Da
Average m/z
501.3174
Average RT
26.5061
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)5.45e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.87e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)4.432e-13
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)8.72e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)6.135e-16
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.345e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.87e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)6.084e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.503e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.387e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.387e-11
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)2.787e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)3.998e-11
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)3.998e-11
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)3.998e-11
Glyma.02G127000 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein 1Chr02:12798511–12806795 (+)7.492e-11
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)3.998e-11
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)3.998e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.266e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.459e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.358e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.704e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.492e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.872e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.574e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)8.41e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.667e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.832e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.534e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.423e-12
Glyma.10G229600 hypothetical protein AT4G23630:BTI1:VIRB2-interacting protein 1 1Chr10:45968793–45973482 (-)6.552e-11
Glyma.10G233200 hypothetical protein NA 1Chr10:46244187–46249491 (-)1.245e-12
Glyma.10G233700 hypothetical protein AT3G49050:AT3G49050:alpha/beta-Hydrolases superfamily protein 1Chr10:46285252–46289700 (-)1.245e-12
Glyma.10G234300 hypothetical protein NA 1Chr10:46335347–46337197 (-)4.996e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.655e-15
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.042e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.042e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.042e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.042e-14
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.616e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)8.673e-13
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.698e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.485e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.485e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.411e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.223e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.236e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.095e-15
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)2.068e-11
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)1.849e-12
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)1.849e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.973e-14
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.34e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)1.14e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.745e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)3.085e-13
Glyma.18G004900 hypothetical protein NA 1Chr18:384332–386910 (+)3.198e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)3.398e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.759e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.464e-15
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.717e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.717e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)5.255e-11
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)1.314e-11
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)7.221e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)9.227e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.562e-15
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.514e-14
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)2.467e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.545e-14
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)8.183e-12