Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49777

Metabolite ID
P49777
Deionized mass
212.1243 Da
Average m/z
213.1316
Average RT
26.3913
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.314e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.26e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.04e-14
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)4.254e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.48e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)5.16e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)5.16e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.974e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.65e-11
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)7.919e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.314e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.314e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.314e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.314e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.757e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.593e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.593e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.593e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.593e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.221e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.179e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.179e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.179e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.524e-12
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)6.633e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.26e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.159e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.159e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.159e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.023e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.593e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.023e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.023e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.738e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.801e-11
Glyma.17G227700 hypothetical protein AT4G33040:AT4G33040:Thioredoxin superfamily protein__AT5G11930:AT5G11930:Thioredoxin superfamily protein 1Chr17:38259023–38262073 (+)6.348e-11
Glyma.18G205800 H-1 ferritin light chain AT5G01600:FER1:ferretin 1 1Chr18:48947662–48950635 (-)4.399e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.946e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.945e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)2.62e-14