Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49761

Metabolite ID
P49761
Deionized mass
97.5033 Da
Average m/z
98.5108
Average RT
26.3740
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 4Chr16:32076715–32092322 (-)2.578e-11
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)6.599e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)5.383e-21
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.159e-11
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)5.158e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.131e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)6.386e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.797e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.616e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.052e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.475e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.475e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.077e-13
Glyma.17G251200 hypothetical protein NA 2Chr17:40605249–40607536 (+)3.033e-15
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 2Chr20:35109869–35115132 (-)7.454e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.515e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.355e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)6.843e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.273e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.273e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.273e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.273e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.273e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.273e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.273e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)6.386e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.885e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.885e-14
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)9.305e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.986e-15
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.712e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)9.125e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.468e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.034e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.293e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.293e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.249e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.084e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.084e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.084e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.232e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.193e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.742e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.731e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.731e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.731e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.731e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.81e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.615e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.59e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.304e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)9.357e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)9.357e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)9.357e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.683e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.159e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.159e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.054e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)6.222e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.744e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.151e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)2.997e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)6.78e-15
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.318e-13
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)5.159e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)5.159e-12
Glyma.08G311200 hypothetical protein AT2G42790:CSY3:citrate synthase 3 1Chr08:43046340–43054067 (+)1.134e-11
Glyma.08G311500 hypothetical protein NA 1Chr08:43083381–43085732 (+)7.022e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)4.791e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.964e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)7.575e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)9.355e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.76e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.727e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.975e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.852e-12
Glyma.11G095600 hypothetical protein AT1G50460:HKL1:hexokinase-like 1 1Chr11:7249880–7254364 (-)2.22e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.616e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.817e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)8.635e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)1.914e-13
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)2.798e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.052e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.635e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.634e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.475e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)4.329e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.23e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.837e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.077e-13
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.051e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.128e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.807e-14
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.72e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.72e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)7.111e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.783e-14
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.783e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.411e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)9.049e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)1.045e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.917e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.646e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.074e-13
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)1.116e-11
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)8.167e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.021e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.019e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)8.951e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.107e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.132e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.518e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.518e-13
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)4.216e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.016e-11
Glyma.18G057500 hypothetical protein AT2G30170:PBCP:Protein phosphatase 2C family protein 1Chr18:5080060–5083756 (-)1.223e-11
Glyma.18G057600 hypothetical protein AT1G07020:AT1G07020:uncharacterized protein 1Chr18:5084210–5084791 (+)1.223e-11
Glyma.18G057900 hypothetical protein NA 1Chr18:5092695–5097651 (-)1.223e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.4e-12
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)2.142e-11
Glyma.20G108600 hypothetical protein NA 1Chr20:35099991–35104464 (+)1.957e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.441e-12