Overview Annotation GWAS Evidence Associated genes

P49588

Metabolite ID
P49588
Deionized mass
407.2631 Da
Average m/z
408.2726
Average RT
26.1812
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
10
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

10 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.42e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)8.096e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)8.096e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.741e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.741e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.741e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.741e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.719e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.719e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)2.809e-11