Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49586

Metabolite ID
P49586
Deionized mass
205.5956 Da
Average m/z
206.6027
Average RT
26.1794
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)8.184e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.5e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.785e-11
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)6.934e-11
Glyma.16G055700 hypothetical protein AT3G56320:AT3G56320:PAP/OAS1 substrate-binding domain superfamily 2Chr16:5450641–5458545 (-)1.38e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.021e-12
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)4.106e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)8.441e-14
Glyma.05G219800 TRE1 trehalase 1 AT4G24040:TRE1:trehalase 1 1Chr05:39920183–39925215 (+)1.458e-12
Glyma.05G220100 hypothetical protein AT1G33170:AT1G33170:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:39950499–39956022 (+)1.458e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.629e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.828e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)9.961e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)5.35e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)5.35e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)6.67e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.272e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.272e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.158e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.158e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.445e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.625e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.094e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.252e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.252e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)1.638e-11
Glyma.13G224800 hypothetical protein NA 1Chr13:33748627–33756494 (-)1.638e-11
Glyma.14G193700 hypothetical protein AT2G29950:ELF4-L1:ELF4-like 1 1Chr14:45845502–45848481 (+)4.134e-11
Glyma.14G193800 hypothetical protein NA 1Chr14:45860185–45866449 (+)9.624e-11
Glyma.14G194100 hypothetical protein AT5G58620:AT5G58620:zinc finger (CCCH-type) family protein 1Chr14:45920719–45923885 (+)5.206e-12
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)1.201e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)6.977e-15
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.5e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.5e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.5e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.5e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.916e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.869e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.046e-11
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)6.576e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.668e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)3.068e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.672e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.785e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.608e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.608e-13
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.592e-11
Glyma.18G057500 hypothetical protein AT2G30170:PBCP:Protein phosphatase 2C family protein 1Chr18:5080060–5083756 (-)5.991e-11
Glyma.18G057600 hypothetical protein AT1G07020:AT1G07020:uncharacterized protein 1Chr18:5084210–5084791 (+)5.991e-11
Glyma.18G057900 hypothetical protein NA 1Chr18:5092695–5097651 (-)5.991e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)7.888e-12
Glyma.20G058300 hypothetical protein AT2G31340:emb1381:embryo defective 1381 1Chr20:17536634–17556845 (-)2.913e-11
Glyma.20G058500 hypothetical protein AT5G35690:AT5G35690:zinc metalloproteinase-like protein 1Chr20:17704024–17732890 (-)2.913e-11
Glyma.20G058600 hypothetical protein NA 1Chr20:17714996–17723526 (-)2.913e-11
Glyma.20G058900 hypothetical protein NA 1Chr20:17856607–17870302 (-)2.913e-11
Glyma.20G059000 hypothetical protein AT4G12650:AT4G12650:Endomembrane protein 70 protein family 1Chr20:17864634–17867799 (+)2.913e-11
Glyma.20G060000 hypothetical protein AT2G04360:AT2G04360:uncharacterized protein 1Chr20:18396137–18402016 (+)2.913e-11
Glyma.20G061600 hypothetical protein AT4G12680:AT4G12680:uncharacterized protein 1Chr20:19167408–19171993 (-)2.913e-11
Glyma.20G061900 hypothetical protein NA 1Chr20:19276438–19277943 (-)2.913e-11
Glyma.20G062200 hypothetical protein NA 1Chr20:19517781–19521218 (-)2.913e-11
Glyma.20G064100 hypothetical protein NA 1Chr20:21538873–21551968 (+)2.913e-11
Glyma.20G065200 hypothetical protein AT4G14965:MAPR4:membrane-associated progesterone binding protein 4 1Chr20:23032161–23039465 (+)2.913e-11
Glyma.20G065700 hypothetical protein NA 1Chr20:23270247–23273003 (+)2.913e-11
Glyma.20G066100 NRP-A AT5G42050:AT5G42050:DCD (Development and Cell Death) domain protein 1Chr20:23415656–23418864 (-)2.913e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)4.074e-11
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 1Chr20:34796301–34808587 (+)2.631e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.061e-12
Glyma.20G105600 hypothetical protein AT2G17033:AT2G17033:pentatricopeptide (PPR) repeat-containing protein 1Chr20:34818550–34820435 (-)2.631e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.651e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.045e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.267e-11
Glyma.20G109100 hypothetical protein AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein 1Chr20:35166747–35171332 (+)1.267e-11