Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49563

Metabolite ID
P49563
Deionized mass
471.2041 Da
Average m/z
472.2098
Average RT
26.1717
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
98
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

98 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.562e-12
Glyma.16G181300 hypothetical protein NA 3Chr16:34225053–34233073 (-)2.288e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.727e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)5.852e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.18e-11
Glyma.11G145000 hypothetical protein AT4G27490:RRP41L:3'-5'-exoribonuclease family protein 2Chr11:11117760–11123162 (+)2.399e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.626e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.626e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.658e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.679e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)2.645e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.264e-14
Glyma.16G181200 hypothetical protein NA 2Chr16:34216133–34221470 (-)6.619e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.488e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)7.449e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.667e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.667e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.885e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.307e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.604e-14
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.997e-12
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)8.359e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)8.359e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.932e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)5.328e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)6.87e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.244e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.622e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.562e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.187e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)4.267e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.15e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.15e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.152e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.839e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.839e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.504e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.504e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.511e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.707e-12
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)4.669e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)4.669e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.078e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)3.514e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)2.553e-12
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)8.729e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.18e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.18e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.18e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.18e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.486e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.973e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.239e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)6.696e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)1.137e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.137e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.419e-11
Glyma.11G144800 hypothetical protein AT2G28250:NCRK:Protein kinase superfamily protein 1Chr11:11096950–11105343 (+)2.399e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.47e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.47e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.896e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.387e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.77e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.77e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)7.834e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.03e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.562e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.723e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.823e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.823e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.626e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.37e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.646e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.679e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)9.798e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.116e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.193e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.116e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.116e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.204e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.952e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.248e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)9.358e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)8.521e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.967e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.767e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.747e-15
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.152e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.152e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)8.423e-12
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)1.578e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.327e-13
Glyma.16G180800 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 1Chr16:34164228–34171821 (+)6.228e-12
Glyma.16G181100 hypothetical protein NA 1Chr16:34198761–34209007 (-)6.619e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)4.31e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.068e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.068e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.022e-12