Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49561

Metabolite ID
P49561
Deionized mass
402.3467 Da
Average m/z
403.3540
Average RT
26.1717
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 2Chr05:37029299–37037313 (+)9.719e-13
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)8.312e-12
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)3.523e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)3.523e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)3.523e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)9.154e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.626e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)1e-10
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.319e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.565e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.565e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.032e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.849e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.849e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.849e-12
Glyma.05G182100 hypothetical protein NA 1Chr05:37003489–37004855 (-)2.917e-11
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)1.226e-12
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)1.226e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)2.125e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.803e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)8.286e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.494e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)8.286e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)8.286e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.494e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.007e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.457e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)9.297e-11
Glyma.11G015300 hypothetical protein AT3G60500:CER7:3'-5'-exoribonuclease family protein 1Chr11:1048122–1055388 (+)7.375e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)9.751e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.607e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.504e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.504e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.504e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.504e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.214e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.214e-11
Glyma.15G121000 hypothetical protein NA 1Chr15:9563579–9565862 (+)9.177e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.456e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)4.866e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)7.403e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.769e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.105e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.743e-11