Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49559

Metabolite ID
P49559
Deionized mass
324.2194 Da
Average m/z
325.2261
Average RT
26.1712
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.89e-13
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)3.669e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)4.478e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.364e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.89e-13
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)7.285e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.569e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)3.669e-11
Glyma.01G161200 hypothetical protein AT4G35750:AT4G35750:SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 1Chr01:49945683–49947759 (-)2.691e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.282e-14
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.29e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)3.438e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)4.789e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)1.11e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.158e-15
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)5.583e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.018e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.795e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.545e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.545e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.545e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.014e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.382e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.892e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.285e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.285e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.775e-12
Glyma.06G304200 hypothetical protein AT1G04910:AT1G04910:O-fucosyltransferase family protein 1Chr06:49352555–49358511 (-)1.082e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.008e-11
Glyma.06G307900 hypothetical protein NA 1Chr06:49664901–49674729 (+)7.064e-11
Glyma.07G062300 hypothetical protein AT2G46220:AT2G46220:DUF2358 family protein (DUF2358) 1Chr07:5518907–5522005 (+)1.027e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.064e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.068e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.563e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.563e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.309e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.929e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.172e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)8.553e-11
Glyma.16G055000 hypothetical protein NA 1Chr16:5411241–5413143 (-)2.872e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.556e-12
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)4.605e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)7.676e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)7.464e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.821e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)4.689e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.238e-13
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)8.62e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.386e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.386e-11
Glyma.18G110500 hypothetical protein NA 1Chr18:13060060–13070455 (+)5.077e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)9.936e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.499e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.499e-13
Glyma.19G026100 hypothetical protein NA 1Chr19:3271594–3272980 (-)8.843e-11
Glyma.19G118600 hypothetical protein NA 1Chr19:37604905–37606757 (-)6.125e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.033e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.541e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.09e-12