Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49524

Metabolite ID
P49524
Deionized mass
337.1384 Da
Average m/z
338.1466
Average RT
26.1631
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)4.163e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.263e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.452e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.452e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.827e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.566e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.273e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.019e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.251e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.477e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.231e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.002e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.293e-13
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.47e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.47e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.47e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.611e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.225e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.225e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.232e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.011e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)6.354e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)6.917e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)6.917e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)2.655e-12
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)3.376e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.161e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)6.161e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.476e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.476e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.653e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.653e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.452e-13
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)7.622e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.303e-17
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.19e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.448e-13
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)2.332e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.965e-11
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)4.024e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.319e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)4.797e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)2.024e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.709e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.229e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.374e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.893e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.52e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.939e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)6.01e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.833e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.833e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.65e-11