Overview Annotation GWAS Evidence Associated genes

P49428

Metabolite ID
P49428
Deionized mass
552.2902 Da
Average m/z
553.2989
Average RT
26.1419
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
15
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

15 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.711e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.992e-13
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)5.487e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.512e-11
Glyma.13G170000 hypothetical protein AT3G01460:MBD9:methyl-CPG-binding domain 9 1Chr13:28401415–28416198 (-)1.719e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.847e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)7.045e-13
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)7.045e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.38e-13
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)3.148e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 1Chr18:47102746–47129707 (+)2.015e-11
Glyma.18G252000 hypothetical protein AT1G02100:SBI1:Leucine carboxyl methyltransferase 1Chr18:53874840–53885068 (-)9.114e-14
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 1Chr18:53885762–53894767 (+)3.216e-12
Glyma.18G252200 hypothetical protein NA 1Chr18:53899264–53899758 (+)1.248e-11
Glyma.20G124000 hypothetical protein AT1G15130:AT1G15130:Endosomal targeting BRO1-like domain-containing protein 1Chr20:36650311–36658785 (+)1.649e-11