Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49226

Metabolite ID
P49226
Deionized mass
678.3215 Da
Average m/z
679.3270
Average RT
25.9474
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.519e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)9.206e-13
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)6.387e-11
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)9.408e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.642e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.322e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.43e-16
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.044e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.864e-17
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.864e-17
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.13e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)8.958e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.519e-13
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)2.65e-14
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.051e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.175e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.731e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.346e-14
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)9.408e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)4.325e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)8.31e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.533e-15
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)3.045e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.279e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.248e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.248e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.215e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.346e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.346e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.346e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)9.803e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.263e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.322e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.255e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.301e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.628e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.69e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.69e-11
Glyma.06G294500 EXPB4 AT4G28250:EXPB3:expansin B3 1Chr06:48356229–48360169 (+)3.257e-14
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.689e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.928e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)4.866e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.866e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.496e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.739e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.739e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.039e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)6.758e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.66e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.66e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.989e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.402e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.044e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.436e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.864e-17
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.864e-17
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.09e-16
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)9.013e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.318e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.054e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.419e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.437e-17
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.955e-17
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.437e-17
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.437e-17
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.673e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.864e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.165e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.355e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.936e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.873e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.079e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.65e-12
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)2.366e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.753e-15
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.122e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.122e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.789e-13
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)2.929e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.695e-14
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)4.499e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.526e-12
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)6.387e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)6.387e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)6.387e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)6.387e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.865e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.498e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.483e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.034e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)5.942e-11
Glyma.20G123500 hypothetical protein NA 1Chr20:36610054–36614582 (-)2.912e-11