Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49096

Metabolite ID
P49096
Deionized mass
345.1255 Da
Average m/z
346.1345
Average RT
25.8465
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
94
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

94 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)7.672e-14
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)7.238e-14
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)7.037e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.092e-12
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)6.018e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.041e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.391e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.406e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.359e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)4.629e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)8.945e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.436e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.436e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.988e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.537e-12
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)1.103e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.249e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.829e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.501e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)9.487e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.759e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.478e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.131e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.197e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)8.289e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)7.986e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)7.986e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)5.921e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)9.498e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)9.498e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.092e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.092e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.092e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.092e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.667e-11
Glyma.09G067600 hypothetical protein NA 1Chr09:6804057–6804365 (+)8.894e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.232e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.987e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)5.278e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)6.473e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.582e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.115e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.115e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.115e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.115e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.118e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.029e-14
Glyma.10G186500 PT7 NA 1Chr10:41946209–41950274 (-)8.631e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)2.593e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.76e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)7.293e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.293e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.293e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)7.293e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.756e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.564e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.207e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.207e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.207e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.766e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.26e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.26e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.261e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.824e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)5.294e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.452e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.406e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.85e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.85e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.052e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.344e-11
Glyma.16G013900 hypothetical protein AT1G17290:AlaAT1:alanine aminotransferas 1Chr16:1208240–1214310 (-)5.565e-12
Glyma.16G014100 hypothetical protein AT1G53830:PME2:pectin methylesterase 2 1Chr16:1222829–1228462 (-)5.565e-12
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)3.412e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)9.397e-15
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.17e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.618e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)8.317e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.111e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.334e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)7.787e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.379e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.379e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)8.492e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.043e-12
Glyma.18G228300 hypothetical protein AT1G01920:AT1G01920:SET domain-containing protein 1Chr18:51737569–51744789 (-)2.303e-11
Glyma.18G228400 hypothetical protein AT5G35730:AT5G35730:EXS (ERD1/XPR1/SYG1) family protein 1Chr18:51748248–51755826 (+)2.303e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.407e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.883e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.883e-13
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)9.432e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.882e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.317e-12
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)7.121e-11