Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49014

Metabolite ID
P49014
Deionized mass
262.1895 Da
Average m/z
263.1980
Average RT
25.7881
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)4.438e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.828e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.437e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.782e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.708e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.23e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.912e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.912e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.902e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.648e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.376e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.887e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.458e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.094e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.145e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.279e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.279e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.279e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.205e-12
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)1.02e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)3.054e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.502e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)9.133e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)7.29e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.782e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.708e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.708e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.708e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.708e-12
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)5.803e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.529e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.651e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.54e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.871e-14
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.855e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)8.325e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.912e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.912e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.738e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.863e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.035e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.107e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.035e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.035e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.39e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.775e-17
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)3.297e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.302e-18
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)5.89e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.189e-22
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.189e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.828e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.121e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.121e-12
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)2.989e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.834e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.437e-11
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)1.745e-16
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)1.745e-16
Glyma.18G214000 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr18:50088148–50092969 (-)2.149e-13
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)5.646e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.483e-11
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)3.079e-11