Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48972

Metabolite ID
P48972
Deionized mass
152.1164 Da
Average m/z
153.1252
Average RT
25.7355
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.78e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.409e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)3.758e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.108e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.152e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.132e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.968e-12
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)4.83e-11
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)1.66e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.78e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.108e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.587e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.315e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.315e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.594e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.019e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.019e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.019e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)5.9e-11
Glyma.05G169100 hypothetical protein NA 1Chr05:35959241–35961911 (+)4.326e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)2.78e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)6.174e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.551e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.551e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.551e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.307e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.307e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.06e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)9.388e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)9.388e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.076e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.708e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.196e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)4.892e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.902e-12
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)6.522e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)9.807e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)6.924e-11
Glyma.12G007700 hypothetical protein NA 1Chr12:563263–567108 (-)6.13e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.399e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.691e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.691e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.053e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.152e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)7.551e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.481e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.481e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.481e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)7.619e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.132e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.968e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.823e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.276e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.128e-11
Glyma.16G014200 hypothetical protein AT5G12370:SEC10:exocyst complex component sec10 1Chr16:1243163–1253803 (-)8.54e-11
Glyma.16G015300 hypothetical protein NA 1Chr16:1335008–1337934 (+)2.098e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.184e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.84e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.361e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.604e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.015e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)2.298e-12
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)3.596e-11
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)3.475e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.66e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)6.121e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.59e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.695e-11
Glyma.18G027300 hypothetical protein NA 1Chr18:2049280–2053959 (-)4.449e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)7.148e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)8.924e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.652e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.37e-12
Glyma.20G109700 hypothetical protein NA 1Chr20:35206615–35208030 (+)7.319e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.549e-13