Overview Annotation GWAS Evidence Associated genes

P48890

Metabolite ID
P48890
Deionized mass
634.3190 Da
Average m/z
635.3275
Average RT
25.7120
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
7
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

7 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.376e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.331e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.864e-17
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)8.414e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.02e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)9.291e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.789e-11