Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48862

Metabolite ID
P48862
Deionized mass
602.3318 Da
Average m/z
603.3364
Average RT
25.6906
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.677e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.677e-12
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)8.52e-11
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)8.52e-11
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)6.531e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.39e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)6.748e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)6.749e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.328e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.262e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.516e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.2e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.563e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.212e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.141e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)6.406e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.634e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.634e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.634e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.634e-11
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.66e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.03e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.66e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.209e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.104e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.362e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.677e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.677e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.507e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)1.064e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)1.064e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)1.064e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.003e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.185e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.888e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.185e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.185e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)3.561e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.676e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)8.866e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.929e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.93e-11