Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48849

Metabolite ID
P48849
Deionized mass
542.3528 Da
Average m/z
543.3627
Average RT
25.6761
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)6.713e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)1.574e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.62e-12
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 2Chr18:51979095–51987062 (-)8.976e-15
Glyma.01G016500 hypothetical protein AT4G25960:ABCB2:P-glycoprotein 2 1Chr01:1573790–1583422 (+)4.132e-12
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)1.413e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.235e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.929e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)9.904e-14
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)7.673e-15
Glyma.06G126300 hypothetical protein NA 1Chr06:10331312–10341252 (-)9.575e-11
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)8.904e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.847e-16
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.585e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.377e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.377e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)1.454e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)8.048e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)3.145e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)3.145e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.823e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.823e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)3.145e-11
Glyma.07G072900 hypothetical protein NA 1Chr07:6636336–6643709 (+)5.96e-11
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)3.202e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.179e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.094e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.018e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.299e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.886e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.532e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.614e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.262e-11
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)2.251e-12
Glyma.14G094500 hypothetical protein NA 1Chr14:8788109–8793948 (-)2.153e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.566e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.241e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.452e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)7.016e-12
Glyma.18G106300 hypothetical protein NA 1Chr18:11900700–11905446 (-)2.489e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.383e-11
Glyma.18G218300 hypothetical protein AT5G01990:AT5G01990:Auxin efflux carrier family protein 1Chr18:50525980–50531206 (-)4.987e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)7.901e-16
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)7.244e-17
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.949e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.949e-11