Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48842

Metabolite ID
P48842
Deionized mass
620.3563 Da
Average m/z
621.3616
Average RT
25.6671
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.905e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.011e-15
Glyma.16G210200 hypothetical protein NA 2Chr16:36933402–36938940 (+)4.611e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)5.915e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.805e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.255e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.042e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.78e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.557e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.676e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.446e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.446e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.446e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.762e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.624e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.669e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)1.604e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.905e-15
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.905e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.905e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.905e-15
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)4.522e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)7.417e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.678e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.678e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.477e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.477e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.866e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.397e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.397e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.397e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.728e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.92e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.815e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)5.803e-11
Glyma.14G197800 hypothetical protein AT2G30120:AT2G30120:protein FLC EXPRESSOR 1Chr14:46303686–46308920 (+)5.803e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.786e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.786e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.882e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.808e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)8.231e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.951e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.069e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.223e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.223e-12
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)5.418e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)4.564e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.838e-12
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)2.583e-11