Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48814

Metabolite ID
P48814
Deionized mass
432.2624 Da
Average m/z
433.2699
Average RT
25.6473
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.259e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.991e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)4.54e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)3.332e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.016e-13
Glyma.08G338900 hypothetical protein NA 2Chr08:45536950–45543029 (-)4.37e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.378e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.845e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.114e-17
Glyma.15G107500 hypothetical protein NA 2Chr15:8435042–8443925 (+)9.253e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.724e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.577e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)1.341e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.991e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.817e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.817e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.546e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.045e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.282e-13
Glyma.03G244500 hypothetical protein AT3G05090:LRS1:Transducin/WD40 repeat-like superfamily protein 1Chr03:44195906–44205767 (+)3.473e-12
Glyma.03G245100 hypothetical protein AT1G54500:AT1G54500:Rubredoxin-like superfamily protein 1Chr03:44246906–44248269 (-)5.791e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)4.262e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.773e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.542e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.451e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.717e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.717e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.496e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.353e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.353e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.353e-14
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.58e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.897e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.657e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)3.82e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.565e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.505e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.505e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.782e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.896e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)6.872e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)6.872e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.32e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)4.756e-14
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)6.104e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)3.086e-12
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)9.359e-11
Glyma.06G296500 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr06:48551973–48557217 (-)2.599e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)2.842e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.016e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.016e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.016e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.016e-13
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)7.617e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.436e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.107e-11
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)2.624e-12
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)2.624e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)3.793e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.267e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.069e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.069e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.65e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.65e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.65e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.088e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.088e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)3.531e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.845e-14
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)3.114e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.114e-17
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.613e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.535e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)4.149e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)4.149e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)5.92e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)5.773e-13
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)5.773e-13
Glyma.15G107800 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr15:8473049–8483746 (+)2.864e-13
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)3.69e-12
Glyma.15G109500 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr15:8591856–8593774 (-)2.989e-11
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)2.315e-12
Glyma.15G111200 hypothetical protein AT1G11950:AT1G11950:Transcription factor jumonji (jmjC) domain-containing protein 1Chr15:8705907–8710609 (-)1.768e-12
Glyma.15G111900 hypothetical protein NA 1Chr15:8769366–8777275 (-)3.815e-11
Glyma.15G112100 hypothetical protein AT4G04180:AT4G04180:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr15:8796403–8805644 (-)3.815e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.584e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.584e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.584e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.738e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.361e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)6.428e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.849e-14
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.849e-14
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.137e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.957e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.416e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.355e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.172e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.727e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.393e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)6.661e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)6.661e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.017e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.968e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.968e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.743e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.743e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.243e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.577e-11
Glyma.18G206000 hypothetical protein NA 1Chr18:48972350–48976819 (+)4.379e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.41e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.41e-15
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)7.494e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.098e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)5.095e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.575e-14
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)3.279e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.305e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.715e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.531e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.618e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.544e-12