Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48607

Metabolite ID
P48607
Deionized mass
635.1950 Da
Average m/z
636.2036
Average RT
25.4537
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)8.186e-11
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)5.772e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.054e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.678e-11
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)8.186e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)8.186e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.35e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.04e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.972e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.603e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.603e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.603e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.751e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.282e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.511e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.532e-14
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.975e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)1.552e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)1.552e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.102e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.678e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.678e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.678e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.678e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.742e-13
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.508e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)8.425e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)6.207e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)6.207e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.695e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.695e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.695e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.695e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.345e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.173e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)3.552e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.025e-12
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)8.854e-11
Glyma.13G164300 hypothetical protein NA 1Chr13:27934139–27936052 (-)4.833e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.267e-12
Glyma.15G158100 hypothetical protein AT5G62270:GCD1:ribosomal protein L20 1Chr15:13241421–13247242 (-)7.33e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.587e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.285e-12
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)8.186e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)8.186e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)8.186e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)9.416e-11
Glyma.18G040000 GAI AT1G66350:RGL1:RGA-like 1__AT3G03450:RGL2:RGA-like 2 1Chr18:3278869–3281985 (-)9.964e-14
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.439e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.514e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.685e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.685e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.458e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)2.275e-12