Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48372

Metabolite ID
P48372
Deionized mass
738.4153 Da
Average m/z
739.4218
Average RT
25.2535
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)8.128e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)7.374e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.591e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.489e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)4.401e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.48e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.429e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.429e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.429e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)9.381e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)9.381e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.396e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.396e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.478e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.709e-12
Glyma.08G061000 hypothetical protein AT1G11340:AT1G11340:G-type lectin S-receptor-like Serine/Threonine-kinase 1Chr08:4694260–4698526 (-)5.158e-11
Glyma.08G207300 hypothetical protein NA 1Chr08:16745344–16755320 (+)6.31e-11
Glyma.08G207400 hypothetical protein AT1G80000:AT1G80000:CASC3/Barentsz eIF4AIII binding protein 1Chr08:16756340–16761352 (+)6.31e-11
Glyma.08G207500 hypothetical protein NA 1Chr08:16760797–16761352 (+)6.31e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.323e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.261e-11
Glyma.11G122700 hypothetical protein NA 1Chr11:9354319–9356396 (-)4.412e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.15e-11
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)4.192e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.574e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.574e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.574e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.975e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.975e-11
Glyma.13G293600 hypothetical protein NA 1Chr13:39321355–39324767 (+)1.509e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.139e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.697e-17
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.058e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.298e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.479e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.77e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.479e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.479e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.079e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)5.382e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.873e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.284e-11