Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48241

Metabolite ID
P48241
Deionized mass
332.1700 Da
Average m/z
333.1783
Average RT
25.1265
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.556e-11
Glyma.16G180100 hypothetical protein NA 3Chr16:34070806–34076053 (+)4.983e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.245e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.334e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.596e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.731e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.731e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.984e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.005e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.005e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.005e-12
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)7.409e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.296e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.517e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)2.427e-11
Glyma.11G180700 hypothetical protein NA 1Chr11:24714140–24720483 (-)2.887e-11
Glyma.11G181000 hypothetical protein AT5G22310:AT5G22310:trichohyalin-like protein 1Chr11:24770371–24774042 (-)2.887e-11
Glyma.11G181500 hypothetical protein AT2G27350:OTLD1:OTU-like cysteine protease family protein 1Chr11:24857330–24867075 (-)2.887e-11
Glyma.11G181600 hypothetical protein NA 1Chr11:24859746–24862422 (+)2.887e-11
Glyma.11G182400 hypothetical protein NA 1Chr11:24988921–24993379 (+)7.591e-14
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)3.709e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.264e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.264e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.121e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.121e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.085e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.085e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.522e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.875e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.875e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.654e-11
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)3.864e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.279e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)7.374e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.764e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)8.491e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)5.555e-11
Glyma.19G027200 hypothetical protein AT5G15400:AT5G15400:U-box domain-containing protein 1Chr19:3392784–3401129 (-)3.371e-16
Glyma.19G027400 hypothetical protein AT3G01060:AT3G01060:lysine-tRNA ligase 1Chr19:3422833–3427270 (+)1.757e-11
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)5.905e-11
Glyma.19G027900 hypothetical protein AT5G15450:CLPB3:casein lytic proteinase B3 1Chr19:3485283–3498153 (-)3.246e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)1.86e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.112e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.75e-11