Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48190

Metabolite ID
P48190
Deionized mass
456.3251 Da
Average m/z
457.3331
Average RT
25.1107
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
140
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

140 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)7.477e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.445e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.768e-19
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.837e-16
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.989e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.989e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.989e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.083e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)7.65e-14
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 2Chr13:14530308–14541307 (-)6.025e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.495e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.495e-13
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)3.924e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.443e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.781e-12
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)6.163e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)7.764e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.445e-14
Glyma.20G106900 hypothetical protein NA 2Chr20:34962043–34967985 (+)1.71e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.626e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.626e-13
Glyma.01G175700 hypothetical protein NA 1Chr01:51244446–51248246 (+)1.179e-11
Glyma.01G176400 hypothetical protein AT1G63810:AT1G63810:nucleolar protein 1Chr01:51285599–51295173 (-)2.545e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.02e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.939e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.777e-16
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.476e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.663e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.038e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)7.418e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.658e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.701e-14
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.299e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.151e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.736e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.224e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.96e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.96e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.014e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.359e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.359e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.359e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.135e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)4.201e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.709e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.381e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.087e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.516e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)4.138e-13
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)4.138e-13
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)4.138e-13
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)4.138e-13
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)7.019e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.845e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.046e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.585e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)9.819e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)1.596e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.711e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.584e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.584e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.651e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.651e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)5.518e-13
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)5.519e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)6.172e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.516e-11
Glyma.08G123500 hypothetical protein NA 1Chr08:9494946–9505931 (-)6.858e-13
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.389e-14
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.93e-14
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.103e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.313e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.008e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)4.263e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.733e-15
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.132e-15
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)1.636e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)1.636e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.989e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.989e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.989e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.989e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.989e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)3.012e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.162e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.284e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.284e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.284e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.284e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.813e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.39e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.39e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.679e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.679e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.209e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.226e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.152e-11
Glyma.12G202500 hypothetical protein AT1G03600:PSB27:photosystem II family protein 1Chr12:36301835–36304669 (+)8.171e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.643e-14
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)6.025e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.317e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.317e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.495e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.035e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.851e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.839e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.781e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.725e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.725e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.725e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.035e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.81e-13
Glyma.16G114900 hypothetical protein NA 1Chr16:25456379–25485759 (+)3.247e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)2.993e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.994e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.632e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.543e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.648e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.978e-12
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)3.079e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.193e-13
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)1.061e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.13e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.876e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.876e-14
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)5.285e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.301e-13
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)3.348e-11
Glyma.19G006200 hypothetical protein NA 1Chr19:590763–595425 (+)4.547e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.916e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.916e-13
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)5.196e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)3.217e-14
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)9.268e-15
Glyma.20G100900 hypothetical protein AT3G20015:AT3G20015:Eukaryotic aspartyl protease family protein 1Chr20:34421932–34423966 (-)4.327e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)5.19e-16
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)7.477e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)6.426e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.506e-17
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.462e-11