Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48008

Metabolite ID
P48008
Deionized mass
295.1833 Da
Average m/z
296.1921
Average RT
25.0352
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
99
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

99 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.54e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)7.963e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.207e-11
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)2.264e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.169e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.169e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.573e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.55e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.444e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.54e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.345e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.345e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.132e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.04e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.977e-13
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)8.801e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)7.648e-14
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.038e-14
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)1.384e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.875e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.875e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.875e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.177e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)6.539e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)3.081e-13
Glyma.06G308900 hypothetical protein AT1G08465:YAB2:Plant-specific transcription factor YABBY family protein 1Chr06:49751109–49759885 (+)7.814e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.207e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.207e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.207e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.207e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.84e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)8.597e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)8.597e-11
Glyma.10G236000 hypothetical protein NA 1Chr10:46499079–46501955 (-)8.808e-11
Glyma.10G236100 hypothetical protein AT5G52280:AT5G52280:Myosin heavy chain-related protein 1Chr10:46503152–46510614 (-)8.808e-11
Glyma.10G236800 hypothetical protein NA 1Chr10:46559759–46563487 (+)8.808e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)6.514e-11
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)2.939e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.726e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.726e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.615e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.615e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.153e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.153e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.169e-12
Glyma.13G138300 hypothetical protein AT2G37130:AT2G37130:Peroxidase superfamily protein 1Chr13:25095882–25099473 (-)8.207e-11
Glyma.13G223900 hypothetical protein AT1G29690:CAD1:MAC/Perforin domain-containing protein 1Chr13:33672010–33679263 (-)6.19e-11
Glyma.14G063600 hypothetical protein AT5G05840:AT5G05840:replication factor C subunit, putative (DUF620) 1Chr14:5163603–5167769 (+)1.014e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.573e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.036e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.336e-12
Glyma.16G015300 hypothetical protein NA 1Chr16:1335008–1337934 (+)6.384e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.355e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.355e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.012e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.471e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.057e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.022e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.212e-14
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)7.672e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)5.435e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.206e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.205e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)1.097e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)1.097e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.178e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.916e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)7.963e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.232e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.232e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.031e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)9.601e-11
Glyma.18G243300 hypothetical protein AT3G24090:GFAT:putative glucosamine-fructose-6-phosphate aminotransferase 1Chr18:53151480–53157909 (+)1.376e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.931e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.98e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.254e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.185e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.185e-13
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)3.046e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.634e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.979e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.283e-11
Glyma.20G058300 hypothetical protein AT2G31340:emb1381:embryo defective 1381 1Chr20:17536634–17556845 (-)7.148e-12
Glyma.20G058500 hypothetical protein AT5G35690:AT5G35690:zinc metalloproteinase-like protein 1Chr20:17704024–17732890 (-)7.148e-12
Glyma.20G058600 hypothetical protein NA 1Chr20:17714996–17723526 (-)7.148e-12
Glyma.20G058900 hypothetical protein NA 1Chr20:17856607–17870302 (-)7.148e-12
Glyma.20G059000 hypothetical protein AT4G12650:AT4G12650:Endomembrane protein 70 protein family 1Chr20:17864634–17867799 (+)7.148e-12
Glyma.20G060000 hypothetical protein AT2G04360:AT2G04360:uncharacterized protein 1Chr20:18396137–18402016 (+)7.148e-12
Glyma.20G061600 hypothetical protein AT4G12680:AT4G12680:uncharacterized protein 1Chr20:19167408–19171993 (-)7.148e-12
Glyma.20G061900 hypothetical protein NA 1Chr20:19276438–19277943 (-)7.148e-12
Glyma.20G062200 hypothetical protein NA 1Chr20:19517781–19521218 (-)7.148e-12
Glyma.20G064100 hypothetical protein NA 1Chr20:21538873–21551968 (+)7.148e-12
Glyma.20G065200 hypothetical protein AT4G14965:MAPR4:membrane-associated progesterone binding protein 4 1Chr20:23032161–23039465 (+)7.148e-12
Glyma.20G065700 hypothetical protein NA 1Chr20:23270247–23273003 (+)7.148e-12
Glyma.20G066100 NRP-A AT5G42050:AT5G42050:DCD (Development and Cell Death) domain protein 1Chr20:23415656–23418864 (-)7.148e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.834e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)4.24e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.038e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.064e-11