Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47999

Metabolite ID
P47999
Deionized mass
629.3536 Da
Average m/z
630.3616
Average RT
25.0315
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)8.71e-13
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 3Chr10:48805999–48811533 (-)1.96e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)4.255e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.938e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.111e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.615e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.649e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.007e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.007e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.793e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)9.301e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)6.396e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.973e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.037e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.483e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.286e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.447e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.141e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)1.604e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)3.922e-13
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)2.307e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.763e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.763e-12
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.616e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.104e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.925e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.279e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.861e-17
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.751e-15
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.615e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.166e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.335e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.022e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.169e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.333e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.277e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.17e-15
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)8.766e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.541e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.591e-12
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)7.459e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)2.401e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)7.089e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.214e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)9.719e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)8.071e-12