Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47903

Metabolite ID
P47903
Deionized mass
424.1738 Da
Average m/z
425.1837
Average RT
24.9798
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)3.647e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)2.048e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.937e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.53e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.797e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)7.348e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)6.568e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.363e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.757e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.415e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)2.654e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.507e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.937e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.984e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.984e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.858e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.027e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.027e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.027e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)9.552e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.543e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.686e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.012e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.293e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.293e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.293e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.072e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.072e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.543e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)9e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)3.178e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)3.178e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.698e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.556e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)5.79e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.42e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.077e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.3e-11
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)8.87e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.927e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.927e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.937e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.018e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.018e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.018e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.249e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.675e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.839e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.325e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.817e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.325e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.325e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.684e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.39e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.191e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.701e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.876e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.93e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)6.726e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)4.932e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)6.726e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)6.726e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.123e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.481e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.83e-11