Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47753

Metabolite ID
P47753
Deionized mass
700.4826 Da
Average m/z
701.4900
Average RT
24.9142
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)6.771e-13
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)4.761e-12
Glyma.12G015800 hypothetical protein NA 2Chr12:1126280–1132370 (-)4.511e-12
Glyma.12G018000 hypothetical protein NA 2Chr12:1252709–1256330 (-)5.735e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.325e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.325e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.622e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.536e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.459e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.649e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.649e-11
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)2.572e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.32e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.268e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)4.761e-12
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)4.761e-12
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)4.761e-12
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)4.761e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.037e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.586e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.145e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.772e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.996e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)7.291e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.538e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.639e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.134e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)8.489e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)8.489e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.463e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.602e-11
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)2.112e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.097e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.564e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.564e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.564e-11
Glyma.12G014800 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr12:1071368–1079413 (+)3.493e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.577e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.577e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.445e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.445e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.483e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.409e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.409e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.325e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.805e-12
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)1.359e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)1.367e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.932e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)8.366e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)9.911e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.046e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.905e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.808e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)2.417e-12