Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47736

Metabolite ID
P47736
Deionized mass
674.5264 Da
Average m/z
675.5319
Average RT
24.9108
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 2Chr05:37029299–37037313 (+)5.607e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.964e-13
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)4.001e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)6.312e-12
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)5.727e-13
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)5.727e-13
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)5.727e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.274e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.274e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)1.53e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)5.257e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.222e-11
Glyma.03G172800 hypothetical protein NA 1Chr03:38686815–38687522 (-)3.486e-11
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)6.081e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.694e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.358e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.434e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.311e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.311e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.846e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.639e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.639e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.639e-13
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.943e-11
Glyma.05G166800 SHOOT1 SHOOT1 protein AT1G55480:ZKT:protein containing PDZ domain, a K-box domain, and a TPR region 1Chr05:35731069–35735416 (+)3.476e-11
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)5.607e-12
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)5.607e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.068e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.068e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.051e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.608e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.523e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.412e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.412e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.412e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.412e-12
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)5.448e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.992e-12
Glyma.14G132100 hypothetical protein NA 1Chr14:22626936–22629212 (+)9.86e-11
Glyma.14G133600 hypothetical protein AT4G31390:ACDO1:Protein kinase superfamily protein 1Chr14:23182134–23193763 (+)6.273e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.964e-13
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)1.096e-11
Glyma.14G149700 hypothetical protein AT1G77590:LACS9:long chain acyl-CoA synthetase 9 1Chr14:32271989–32301104 (+)7.37e-12
Glyma.14G149900 hypothetical protein NA 1Chr14:32305914–32312520 (-)1.521e-11
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)4.371e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)4.701e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)4.228e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.687e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.838e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.576e-15
Glyma.18G243300 hypothetical protein AT3G24090:GFAT:putative glucosamine-fructose-6-phosphate aminotransferase 1Chr18:53151480–53157909 (+)3.424e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.792e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.792e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.188e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.11e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.011e-13