Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47520

Metabolite ID
P47520
Deionized mass
270.1612 Da
Average m/z
271.1679
Average RT
24.8044
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
38
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

38 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G023600 hypothetical protein NA 2Chr08:1877250–1880580 (-)2.874e-12
Glyma.08G024200 hypothetical protein AT4G10920:KELP:transcriptional coactivator p15 (PC4) family protein (KELP) 2Chr08:1930916–1935158 (+)2.874e-12
Glyma.01G186200 hypothetical protein AT5G67030:ABA1:zeaxanthin epoxidase (ZEP) (ABA1) 1Chr01:52160350–52170808 (-)9.638e-12
Glyma.01G186600 hypothetical protein AT5G67050:AT5G67050:alpha/beta-Hydrolases superfamily protein 1Chr01:52185307–52192078 (-)9.638e-12
Glyma.01G187100 hypothetical protein NA 1Chr01:52232575–52233414 (+)9.638e-12
Glyma.01G187400 hypothetical protein AT5G67100:ICU2:DNA-directed DNA polymerase 1Chr01:52250433–52263914 (+)9.638e-12
Glyma.02G052300 hypothetical protein AT3G51000:AT3G51000:alpha/beta-Hydrolases superfamily protein 1Chr02:4798699–4802521 (+)1.348e-11
Glyma.02G052900 hypothetical protein AT4G36440:AT4G36440:G-protein coupled receptor 1Chr02:4832702–4841871 (-)1.348e-11
Glyma.02G053200 hypothetical protein AT2G18180:AT2G18180:Sec14p-like phosphatidylinositol transfer family protein 1Chr02:4863464–4869036 (-)1.348e-11
Glyma.02G053400 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr02:4879037–4882501 (+)1.348e-11
Glyma.02G053900 hypothetical protein NA 1Chr02:4904172–4907590 (-)1.348e-11
Glyma.02G093800 hypothetical protein NA 1Chr02:8383112–8391839 (+)2.874e-12
Glyma.02G134000 hypothetical protein AT1G49640:AT1G49640:alpha/beta-Hydrolases superfamily protein__AT1G19190:AT1G19190:alpha/beta-Hydrolases superfamily pr… 1Chr02:13858143–13860616 (-)2.874e-12
Glyma.02G134100 hypothetical protein NA 1Chr02:13865354–13866667 (-)2.874e-12
Glyma.02G134300 hypothetical protein AT2G15730:AT2G15730:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr02:13882473–13887471 (+)2.874e-12
Glyma.02G135400 hypothetical protein NA 1Chr02:14005232–14008459 (-)2.874e-12
Glyma.02G135900 hypothetical protein NA 1Chr02:14086858–14097578 (-)2.874e-12
Glyma.02G136600 hypothetical protein NA 1Chr02:14129031–14133215 (-)2.874e-12
Glyma.02G137000 hypothetical protein AT3G52050:AT3G52050:5'-3' exonuclease family protein 1Chr02:14164694–14180125 (-)2.874e-12
Glyma.02G137100 hypothetical protein AT2G43650:EMB2777:Sas10/U3 ribonucleoprotein (Utp) family protein 1Chr02:14181768–14187505 (+)2.874e-12
Glyma.02G143300 hypothetical protein AT1G03055:D27:beta-carotene isomerase D27-like protein 1Chr02:14781618–14787876 (+)1.348e-11
Glyma.03G218600 hypothetical protein AT3G62570:AT3G62570:Tetratricopeptide repeat (TPR)-like superfamily protein__AT1G02650:AT1G02650:Tetratricopeptide repe… 1Chr03:42212143–42215618 (-)6.778e-12
Glyma.06G313600 hypothetical protein AT5G13750:ZIFL1:zinc induced facilitator-like 1 1Chr06:50219160–50226659 (-)1.348e-11
Glyma.06G317200 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50596576–50599482 (+)1.348e-11
Glyma.06G318600 hypothetical protein NA 1Chr06:50718078–50721548 (+)1.348e-11
Glyma.08G023800 hypothetical protein AT4G10930:AT4G10930:RING/U-box protein 1Chr08:1891782–1904491 (+)2.874e-12
Glyma.08G023900 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic AT4G23940:FtsHi1:FtsH extracellular protease family 1Chr08:1910908–1919382 (+)2.874e-12
Glyma.08G349900 hypothetical protein AT3G07170:AT3G07170:Sterile alpha motif (SAM) domain-containing protein__AT5G48680:AT5G48680:Sterile alpha motif (SAM) … 1Chr08:46397742–46402793 (+)2.51e-12
Glyma.08G353100 hypothetical protein NA 1Chr08:46633525–46637156 (+)2.51e-12
Glyma.08G353800 hypothetical protein AT2G21195:AT2G21195:uncharacterized protein 1Chr08:46674503–46677922 (+)2.51e-12
Glyma.08G355200 hypothetical protein NA 1Chr08:46783898–46786967 (-)2.51e-12
Glyma.08G355800 hypothetical protein AT5G48850:ATSDI1:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:46839052–46840921 (-)2.51e-12
Glyma.11G231700 hypothetical protein AT3G56040:UGP3:UDP-glucose pyrophosphorylase 3 1Chr11:32734340–32742549 (-)2.51e-12
Glyma.11G232500 hypothetical protein AT5G05470:EIF2 ALPHA:eukaryotic translation initiation factor 2 alpha subunit__AT2G40290:AT2G40290:Eukaryotic translati… 1Chr11:32786193–32790357 (-)2.51e-12
Glyma.11G232700 hypothetical protein NA 1Chr11:32811723–32819373 (-)2.51e-12
Glyma.13G361800 hypothetical protein NA 1Chr13:44866362–44867785 (+)3.306e-12
Glyma.20G096200 hypothetical protein NA 1Chr20:33923470–33925550 (-)2.874e-12
Glyma.20G096800 hypothetical protein NA 1Chr20:33996507–33997670 (-)2.874e-12