Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47458

Metabolite ID
P47458
Deionized mass
557.7455 Da
Average m/z
558.7565
Average RT
24.7664
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.206e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.609e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.616e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.363e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)9.776e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.01e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)4.615e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.206e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.315e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.36e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.392e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.276e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.858e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.986e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.38e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.336e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.336e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.327e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.436e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.436e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.436e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.571e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.286e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.737e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.097e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.313e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.313e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.313e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.608e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.608e-14
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)1.569e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.547e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)5.77e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)9.531e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.27e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.183e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)1.116e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.861e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.108e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.108e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.108e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.108e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.791e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.791e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.244e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.244e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.625e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)9.934e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.357e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.616e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.363e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.306e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.601e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.822e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.091e-12
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)6.336e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.681e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.681e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.735e-11
Glyma.19G247900 hypothetical protein AT5G28910:AT5G28910:alpha-(1,6)-fucosyltransferase 1Chr19:49390605–49393975 (+)1.665e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.554e-11