Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47437

Metabolite ID
P47437
Deionized mass
585.2148 Da
Average m/z
586.2201
Average RT
24.7569
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.333e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.222e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.089e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.829e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)3.182e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.656e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.987e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)4.908e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)6.926e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.471e-11
Glyma.03G034200 hypothetical protein NA 1Chr03:3989072–3993561 (+)3.068e-11
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)8.885e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.803e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.077e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.077e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.077e-12
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)5.723e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.277e-14
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.622e-11
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)7.847e-11
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr05:35593651–35600917 (+)7.847e-11
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)7.847e-11
Glyma.05G230700 hypothetical protein NA 1Chr05:40846362–40851592 (-)9.01e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.287e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.475e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.579e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.579e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.578e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.618e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)7.49e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)7.49e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.656e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.656e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.656e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.656e-12
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)7.745e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.757e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.022e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.022e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.022e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.987e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.15e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.15e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.211e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.583e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.759e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)7.028e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.541e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)7.22e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.665e-14
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.222e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.222e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.012e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.587e-14
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)1.199e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.553e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)5.238e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.377e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.277e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.862e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.862e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)9.918e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)5.318e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.301e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.655e-12