Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47101

Metabolite ID
P47101
Deionized mass
408.2452 Da
Average m/z
409.2535
Average RT
24.5198
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.553e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.427e-17
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 3Chr17:36319785–36329259 (-)7.188e-13
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)1.919e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.158e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.148e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)1.81e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.812e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.496e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.496e-11
Glyma.17G212100 hypothetical protein NA 2Chr17:35010757–35014587 (+)7.212e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)7.188e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)7.552e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.553e-11
Glyma.01G154500 hypothetical protein AT1G31780:AT1G31780:oligomeric golgi complex subunit 1Chr01:49196540–49201707 (+)3.516e-12
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)3.371e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.599e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.94e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.418e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.666e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.229e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.265e-13
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)6.473e-11
Glyma.06G162700 hypothetical protein AT5G51050:APC2:Mitochondrial substrate carrier family protein__AT5G61810:APC1:Mitochondrial substrate carrier family pr… 1Chr06:13453882–13457965 (-)3.847e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)3.117e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.595e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)6.417e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)6.417e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)5.43e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)9.551e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.536e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)2.757e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.454e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.127e-12
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)2.944e-11
Glyma.11G105600 hypothetical protein NA 1Chr11:8021436–8024175 (+)1.797e-11
Glyma.11G106300 hypothetical protein AT2G16660:AT2G16660:Major facilitator superfamily protein 1Chr11:8091525–8096026 (-)2.626e-12
Glyma.11G110100 hypothetical protein AT2G16510:AT2G16510:ATPase, F0/V0 complex, subunit C protein 1Chr11:8397135–8398949 (-)6.653e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.104e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.569e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.812e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.668e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.668e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.496e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.186e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.841e-14
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)3.825e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.179e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.134e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.179e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.179e-15
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.951e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.24e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.067e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.067e-11
Glyma.17G212200 hypothetical protein NA 1Chr17:35064075–35065120 (-)4.077e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)9.379e-14
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)5.926e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)9.721e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.051e-13
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)5.903e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.158e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)4.335e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)6.089e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.152e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.955e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.955e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.882e-11