Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46986

Metabolite ID
P46986
Deionized mass
434.2692 Da
Average m/z
435.2782
Average RT
24.4553
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
123
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

123 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)1.325e-17
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.702e-11
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)3.152e-12
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)2.365e-12
Glyma.02G202100 hypothetical protein AT3G52610:AT3G52610:GATA zinc finger protein 2Chr02:38707852–38719801 (+)6.632e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.325e-17
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.325e-17
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.356e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.356e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.356e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.632e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.438e-13
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)8.011e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.799e-16
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.602e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.078e-12
Glyma.01G031900 hypothetical protein AT1G23870:TPS9:trehalose-phosphatase/synthase 9 1Chr01:3342396–3347771 (+)1.4e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)2.6e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.297e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.637e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.903e-13
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)4.52e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)2.365e-12
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)2.365e-12
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)2.365e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.013e-11
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)6.963e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)6.963e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)1.503e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)1.503e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)1.503e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.169e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.689e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.527e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.963e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.143e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.517e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.517e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.517e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.913e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.158e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.761e-11
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)2.739e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)5.452e-14
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)5.452e-14
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)3.534e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)5.249e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.878e-11
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)1.932e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.139e-12
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)8.712e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)3.417e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.417e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)7.009e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.325e-17
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.262e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.325e-17
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)7.224e-12
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)1.862e-12
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)2.833e-11
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)1.318e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.807e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.017e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.527e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)2.124e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)3.914e-11
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)3.914e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.436e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.092e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.356e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.356e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.356e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.48e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.356e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.356e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)7.399e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.747e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.628e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.628e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.628e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.628e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.289e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.461e-13
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)4.861e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.632e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)3.615e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.173e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.173e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.173e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.173e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)4.078e-12
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)4.337e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.191e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.191e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.974e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)5.347e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.848e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.848e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.848e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.245e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.603e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)9.075e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.297e-11
Glyma.15G125700 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr15:9962401–9965136 (+)6.056e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.867e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.944e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.849e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.221e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.221e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.095e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.702e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)6.931e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)6.932e-12
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)9.454e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)5.568e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)5.568e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)8.649e-14
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)8.69e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.51e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.763e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.854e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)7.293e-12
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)4.588e-11