Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46925

Metabolite ID
P46925
Deionized mass
544.3721 Da
Average m/z
545.3785
Average RT
24.4155
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.626e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.137e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.962e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.75e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.089e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.501e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.562e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.561e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.453e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.57e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.57e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.57e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)6.314e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.031e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.924e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.096e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.123e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.539e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.539e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.139e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.488e-11
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)5.388e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.471e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.935e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.935e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.935e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.935e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.155e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.945e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.588e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)7.838e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.838e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.838e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)7.838e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.807e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.807e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.024e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.024e-11
Glyma.14G044100 hypothetical protein AT5G62300:AT5G62300:Ribosomal protein S10p/S20e family protein 1Chr14:3347545–3348907 (+)5.534e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.137e-14
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)4.328e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.114e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.353e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.626e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.626e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.881e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.385e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.065e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.819e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.863e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)3.569e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.35e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.35e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)6.917e-11