Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46773

Metabolite ID
P46773
Deionized mass
611.3067 Da
Average m/z
612.3125
Average RT
24.3138
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.906e-11
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)6.427e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.371e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.968e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.222e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.663e-14
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.25e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.793e-14
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.646e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.383e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.928e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.41e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.011e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.923e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)3.166e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)3.166e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)1.814e-11
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)1.273e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.709e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.371e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.371e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.371e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.371e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.585e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.66e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.569e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.308e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.308e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.308e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.308e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.072e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.638e-13
Glyma.10G236000 hypothetical protein NA 1Chr10:46499079–46501955 (-)2.505e-11
Glyma.10G236100 hypothetical protein AT5G52280:AT5G52280:Myosin heavy chain-related protein 1Chr10:46503152–46510614 (-)2.505e-11
Glyma.10G236800 hypothetical protein NA 1Chr10:46559759–46563487 (+)2.505e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.396e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.087e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.907e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.545e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.222e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.03e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.03e-11
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)6.414e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.366e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.366e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.96e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)3.904e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.676e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.204e-15
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)3.57e-13
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)2.28e-12
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)3.975e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.776e-13
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)3.519e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.302e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.53e-15
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.953e-12