Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46700

Metabolite ID
P46700
Deionized mass
863.4812 Da
Average m/z
864.4902
Average RT
24.2820
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.046e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.506e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.958e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.184e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)5.59e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)5.103e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.745e-11
Glyma.03G081100 hypothetical protein NA 1Chr03:21841282–21846130 (+)8.18e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.327e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.249e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.509e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.509e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.509e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.629e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.263e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)7.963e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.777e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.345e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)3.208e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)3.208e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)2.41e-11
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)5.257e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)2.953e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)7.38e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.046e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.046e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)7.133e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)7.133e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)3.943e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)3.943e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)7.133e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)5.577e-12
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)4.858e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.145e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.032e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.38e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)4.336e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.031e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.323e-13
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)2.052e-13
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.609e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.609e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.992e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)2.025e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)9.623e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)5.093e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.573e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.351e-15
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.958e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.626e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.626e-11
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)4.973e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.432e-12
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)6.845e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.897e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.897e-13
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)3.858e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.163e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.817e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)5.265e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.581e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.371e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.05e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.05e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.172e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.206e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.645e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.63e-11