Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46649

Metabolite ID
P46649
Deionized mass
762.4419 Da
Average m/z
763.4446
Average RT
24.2441
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 9Chr03:2202325–2234931 (+)2.663e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.323e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.936e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)5.365e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)5.56e-11
Glyma.08G147300 hypothetical protein NA 2Chr08:11238871–11242682 (+)1.147e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.703e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)6.382e-12
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)2.084e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)3.376e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.641e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)5.868e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)9.931e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.046e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)6.532e-11
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)3.186e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)3.543e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.855e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.048e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)3.726e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.531e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.212e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.212e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.456e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.456e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.456e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.795e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.626e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.581e-13
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)4.436e-11
Glyma.15G152400 hypothetical protein NA 1Chr15:12641790–12646649 (+)4.436e-11
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)4.436e-11
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)7.159e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.323e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.323e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.323e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.323e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.882e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.936e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.936e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.4e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.369e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.507e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.409e-15
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)4.622e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.328e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.084e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.051e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.3e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.099e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.732e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)5.043e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.977e-11
Glyma.18G107800 hypothetical protein AT1G06500:AT1G06500:uncharacterized protein 1Chr18:12208710–12212011 (-)6.29e-11
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 1Chr18:12220182–12260477 (+)6.29e-11
Glyma.18G108000 hypothetical protein NA 1Chr18:12221736–12225257 (-)6.29e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)6.606e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.075e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.075e-14