Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46569

Metabolite ID
P46569
Deionized mass
637.3670 Da
Average m/z
638.3767
Average RT
24.1728
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)5.698e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)2.85e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.228e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.415e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.087e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.367e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.408e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.165e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)3.857e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.042e-14
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.158e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.158e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.762e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)5.447e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.205e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.138e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.671e-15
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)4.067e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.371e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.472e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.472e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.56e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.339e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.339e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.339e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)7.882e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.407e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.752e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.445e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.011e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.483e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.483e-15
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)9.908e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)9.908e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.087e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.087e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.087e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.087e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.239e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.239e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.094e-13
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)5.698e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)5.698e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.215e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.728e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.594e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.594e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.475e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)6.017e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.644e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.644e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.644e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.644e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.221e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.221e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.408e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.283e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.116e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.809e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.85e-13
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)8.432e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.85e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.323e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.769e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)2.26e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)3.619e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.228e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.228e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.228e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.228e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.777e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.504e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.504e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.962e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.565e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.556e-12