Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46568

Metabolite ID
P46568
Deionized mass
458.3560 Da
Average m/z
459.3643
Average RT
24.1725
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G078000 hypothetical protein NA 2Chr07:7121636–7126695 (+)2.847e-14
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 2Chr10:2485817–2497071 (-)1.994e-11
Glyma.18G106300 hypothetical protein NA 2Chr18:11900700–11905446 (-)1.699e-11
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)6.162e-15
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.116e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)8.15e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.379e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.049e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.513e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.068e-11
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)1.373e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)3.166e-13
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)3.166e-13
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)2.104e-13
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)2.467e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)9.675e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)9.675e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)6.228e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)6.228e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)9.675e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.833e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.833e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)7.403e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.677e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)9.906e-11
Glyma.08G137600 hypothetical protein AT4G39780:AT4G39780:Integrase-type DNA-binding superfamily protein 1Chr08:10551821–10553620 (-)1.378e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.559e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.344e-12
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)5.264e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.481e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.994e-11
Glyma.10G028600 hypothetical protein NA 1Chr10:2487313–2489838 (+)3.675e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)4.745e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)6.436e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)5.245e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.009e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.753e-14
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)3.805e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)9.763e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)9.763e-11
Glyma.18G105800 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein 1Chr18:11773374–11782733 (+)7.02e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)1.314e-12
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)1.314e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.992e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)2.441e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.133e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.133e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.503e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.75e-11