Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46563

Metabolite ID
P46563
Deionized mass
548.3660 Da
Average m/z
549.3741
Average RT
24.1683
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.273e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)3.333e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.014e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.014e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.007e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.395e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.478e-11
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)3.411e-14
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.442e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.656e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.761e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.483e-13
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)1.003e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.285e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.009e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.798e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)2.916e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.766e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.841e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.841e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.84e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.713e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.508e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.508e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.921e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.457e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)9.627e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)6.749e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)7.981e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)8.254e-15
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)5.19e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)8.393e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)7.338e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)7.338e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.832e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)8.841e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)8.841e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.014e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.014e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.731e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.911e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)9.037e-12
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)2.293e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)3.893e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.674e-15
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.43e-18
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.781e-20
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.485e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.627e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.627e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)6.225e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.013e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.395e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.061e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.33e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.512e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.953e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.512e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.512e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.025e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.164e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.04e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.175e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.918e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)5.754e-11
Glyma.17G034100 hypothetical protein AT4G16210:ECHIA:enoyl-CoA hydratase/isomerase A 1Chr17:2492326–2494702 (+)1.675e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)7.192e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)7.192e-11
Glyma.17G039300 hypothetical protein AT4G15230:ABCG30:pleiotropic drug resistance 2__AT4G15233:ABCG42:ABC-2 and Plant PDR ABC-type transporter family protei… 1Chr17:2918657–2932426 (-)9.394e-11
Glyma.18G106300 hypothetical protein NA 1Chr18:11900700–11905446 (-)5.115e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)4.793e-12
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)4.793e-12