Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46561

Metabolite ID
P46561
Deionized mass
548.3708 Da
Average m/z
549.3826
Average RT
24.1656
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 2Chr08:8768854–8772973 (-)2.435e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.718e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.187e-15
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.242e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.124e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.815e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.603e-13
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.229e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.229e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)5.43e-12
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)3.602e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)5.43e-12
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)2.079e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)9.111e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)7.197e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)4.48e-12
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.779e-12
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)8.717e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.548e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)3.332e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)9.692e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.256e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.265e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.012e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)7.891e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.002e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.984e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.984e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.984e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.984e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.201e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.588e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.104e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.588e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.588e-13
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)9.776e-12
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)9.776e-12
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)9.776e-12
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)9.02e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.35e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.102e-12
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)2.692e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.455e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.068e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.718e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.499e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.808e-11