P46558
Metabolite ID
P46558
Deionized mass
644.3640 Da
Average m/z
645.3719
Average RT
24.1634
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.18G195500 | hypothetical protein | NA | 4 | Chr18:46967195–46981775 (+) | 6.012e-12 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 4.911e-12 | |
| Glyma.12G015800 | hypothetical protein | NA | 2 | Chr12:1126280–1132370 (-) | 4.805e-12 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 3.937e-13 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 3.937e-13 | |
| Glyma.16G031600 | hypothetical protein | NA | 2 | Chr16:2964569–2985013 (+) | 5.584e-11 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 2 | Chr16:26324650–26336836 (+) | 4.968e-13 | |
| Glyma.18G196200 | hypothetical protein | AT3G09100:AT3G09100:mRNA capping enzyme family protein | 2 | Chr18:47102746–47129707 (+) | 1.268e-11 | |
| Glyma.02G115900 | hypothetical protein | AT1G26480:GRF12:ral regulatory factor 12 | 1 | Chr02:11280858–11285984 (+) | 2.015e-13 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 5.385e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 1.195e-11 | |
| Glyma.03G204300 | hypothetical protein | AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 | 1 | Chr03:41250882–41253833 (-) | 5.299e-11 | |
| Glyma.04G084200 | hypothetical protein | AT2G25830:AT2G25830:YebC-like protein | 1 | Chr04:7137351–7146570 (-) | 2.548e-12 | |
| Glyma.04G086600 | hypothetical protein | NA | 1 | Chr04:7374806–7380808 (+) | 2.499e-11 | |
| Glyma.05G149300 | hypothetical protein | AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein | 1 | Chr05:34357418–34361032 (-) | 1.556e-11 | |
| Glyma.05G149900 | hypothetical protein | NA | 1 | Chr05:34389242–34393621 (-) | 1.556e-11 | |
| Glyma.05G224700 | hypothetical protein | NA | 1 | Chr05:40351005–40361888 (+) | 1.529e-11 | |
| Glyma.05G226000 | hypothetical protein | AT5G19730:AT5G19730:Pectin lyase-like superfamily protein | 1 | Chr05:40458098–40461736 (+) | 2.508e-11 | |
| Glyma.05G231800 | ALDH2C1 | aldehyde dehydrogenase family 2 member C1 | AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 | 1 | Chr05:40924505–40929251 (+) | 1.308e-11 |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 2.946e-12 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.75e-11 | |
| Glyma.06G261900 | hypothetical protein | NA | 1 | Chr06:44875369–44879702 (-) | 4.724e-11 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 8.047e-11 | |
| Glyma.06G291800 | hypothetical protein | NA | 1 | Chr06:48044194–48047197 (-) | 2.803e-11 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 8.047e-11 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 8.047e-11 | |
| Glyma.06G292200 | hypothetical protein | AT5G44290:AT5G44290:Protein kinase superfamily protein | 1 | Chr06:48100578–48107433 (-) | 2.803e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 5.04e-12 | |
| Glyma.08G099800 | hypothetical protein | NA | 1 | Chr08:7636648–7639681 (+) | 9.197e-11 | |
| Glyma.08G330400 | hypothetical protein | NA | 1 | Chr08:44820327–44823668 (+) | 9.782e-11 | |
| Glyma.08G330500 | hypothetical protein | AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein | 1 | Chr08:44824324–44827127 (-) | 9.782e-11 | |
| Glyma.09G058900 | hypothetical protein | NA | 1 | Chr09:5397968–5404650 (-) | 7.567e-12 | |
| Glyma.10G274700 | hypothetical protein | AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein | 1 | Chr10:49769554–49774168 (-) | 3.969e-11 | |
| Glyma.11G000200 | hypothetical protein | AT1G76670:AT1G76670:Nucleotide-sugar transporter family protein__AT5G42420:AT5G42420:Nucleotide-sugar transporter famil… | 1 | Chr11:7666–11455 (+) | 5.1e-12 | |
| Glyma.11G000700 | hypothetical protein | AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein | 1 | Chr11:33497–35198 (+) | 8.67e-14 | |
| Glyma.12G001400 | hypothetical protein | AT1G72090:AT1G72090:Methylthiotransferase | 1 | Chr12:113763–118480 (+) | 7.097e-11 | |
| Glyma.12G001600 | PM27 | seed maturation protein PM27 | AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… | 1 | Chr12:127545–128932 (+) | 7.097e-11 |
| Glyma.12G001700 | hypothetical protein | AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein | 1 | Chr12:132389–134935 (+) | 7.097e-11 | |
| Glyma.12G014800 | hypothetical protein | AT4G27630:GTG2:GPCR-type G protein 2 | 1 | Chr12:1071368–1079413 (+) | 4.805e-12 | |
| Glyma.12G098200 | hypothetical protein | AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein | 1 | Chr12:8452063–8456493 (+) | 7.798e-11 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 6.684e-12 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 6.684e-12 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 6.099e-11 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 1 | Chr12:36406747–36413696 (+) | 9.677e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 7.884e-11 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 7.884e-11 | |
| Glyma.13G133800 | hypothetical protein | AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 | 1 | Chr13:24601574–24606756 (-) | 5.951e-11 | |
| Glyma.13G133900 | hypothetical protein | NA | 1 | Chr13:24613843–24616128 (+) | 5.951e-11 | |
| Glyma.13G134000 | hypothetical protein | NA | 1 | Chr13:24618272–24619048 (-) | 5.951e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 4.911e-12 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 6.403e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 4.939e-12 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 4.939e-12 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 3.937e-13 | |
| Glyma.13G162300 | hypothetical protein | NA | 1 | Chr13:27773991–27778719 (-) | 4.63e-11 | |
| Glyma.16G003000 | hypothetical protein | AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein | 1 | Chr16:164584–168767 (+) | 1.122e-11 | |
| Glyma.16G003200 | hypothetical protein | NA | 1 | Chr16:172940–178668 (-) | 1.122e-11 | |
| Glyma.16G003600 | hypothetical protein | AT5G49945:AT5G49945: | 1 | Chr16:198072–202486 (-) | 6.703e-12 | |
| Glyma.16G116500 | hypothetical protein | AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein | 1 | Chr16:26057276–26069534 (+) | 6.726e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 1.519e-12 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 8.377e-12 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 1.973e-13 | |
| Glyma.18G195000 | hypothetical protein | NA | 1 | Chr18:46858462–46861415 (+) | 3.135e-11 | |
| Glyma.18G195900 | accA-2 | AT2G38040:CAC3:acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | 1 | Chr18:47054765–47060075 (+) | 1.109e-11 | |
| Glyma.19G128200 | hypothetical protein | NA | 1 | Chr19:38739769–38743404 (+) | 1.43e-11 | |
| Glyma.20G217700 | hypothetical protein | AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein | 1 | Chr20:45347424–45357977 (-) | 1.36e-12 | |
| Glyma.20G218100 | hypothetical protein | AT1G32900:GBSS1:UDP-Glycosyltransferase superfamily protein | 1 | Chr20:45387265–45391879 (-) | 4.724e-11 |